Total Account value in Kite
Total account value = Margin available - Margin used.
The funds you transfer will be added to Margin available to trade. During the trading day, if your market transactions result in a credit of funds to your trading account, then margin used will show a negative value and will be added to Total account value. If your market transactions result in a debit of funds from your trading account, then margin used will show a positive value and will be debited from Total account value.
As to why the amount has been updated twice, it has been discussed here.
Congrats, way to go!