National Institute of Securities Markets (NISM) offers various certifications related to the Financial markets. You can register yourself and take up these certifications: http://www.nism.ac.in/
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NSE and BSE both offer course but these are mostly related to technical analysis, financial analysis, post graduate diplomas.
http://www.nseindia.com/education/content/about_ncfm.htm#
http://www.bseindia.com/#training
Following organizations do offer certificate courses in trading. (Don’t have any personal experience)
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Read about the top certifications at the below link: