Discontinuation of pooling for mutual funds and how it affects Coin

I use Zerodha mostly for mutual funds (Coin), and now since the payments for funds are deducted directly from bank account, not through Zerodha funds. To cover the AMC charges, I try to maintain a balance in my Zerodha funds, but this amount is transferred back to my bank account during the quarterly settlement. The billing cycle for AMC charges is confusing, as I receive no notification when a payment is due. However, if the payment is delayed, I incur penalty charges. Is there any way to avoid this issue?

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