Everyone does face the same, though I wouldn’t consider keeping records (especially now that they are all electronic — this was not the case when I started buying shares, all those records are just on paper!) such a difficult thing.
A more serious issue that you will face, and one which is peculiar to Zerodha’s way of reporting transactions, is the issue of untangling STT amounts paid per trade. I have described this issue in this other comment. If you do positional trades with Zerodha where LTCG is involved, then this is going to be a real pain when reporting your taxes in the year of sale.